You need to reverse all of the owner payments that you made at the end of the correct month. Then you need to do an owner payment manually for each of the owner payments that show on your bank statement.
Some of the owners will have been paid more than they were due and this will leave them in negative.
Once that is done you can reconcile. You will need to let your owners know as these payments will not match their owner statements.
For those owners who did not get paid enough, you can now do an extra payment so that it matches their owner statement.